Bedford T, Suchard MA, Lemey P, Dudas G, Gregory V, Hay AJ, McCauley JW, Russell CA, Smith DJ, Rambaut A. 2013. Integrating influenza antigenic dynamics with molecular evolution. arXiv: 1304.3637. • PDF • arXiv • GitHub •

Volz EM, Koelle K, Bedfordt T. 2013. Viral phylodynamics. PLoS Comput Biol 9: e1002947. • PDF • Original Wikipedia • Current Wikipedia •

Zinder D, Bedford T, Gupta S, Pascual M. 2013. The roles of competition and mutation in shaping antigenic and genetic diversity in influenza. PLoS Pathog 9: e1003104. • PDF •

Bedford T, Rambaut A, Pascual M. 2012. Canalization of the evolutionary trajectory of the human influenza virus. BMC Biol 10: 38. • HTML • PDF • GitHub •

Baele G, Lemey P, Bedford T, Rambaut A, Suchard MA, Alekseyenko AV. 2012. Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty. Mol Biol Evol 29: 2157-2167. • PDF •

Baskerville EB, Dobson AP, Bedford T, Allesina S, Anderson TM, Pascual M. 2011. Spatial guilds in the Serengeti food web revealed by a Bayesian group model. PLoS Comput Biol 7: e1002321. • PDF • Supp. Appendix • Visualization •

Bedford T, Cobey S, Pascual M. 2011. Strength and tempo of selection revealed in viral gene genealogies. BMC Evol Biol 11: 220. • HTML • PDF • Simulation • Analysis •

Rogers RL, Bedford T, Lyons AM, Hartl DL. 2010. Adaptive impact of the chimeric gene Quetzalcoatl in Drosophila melanogaster. Proc Natl Acad Sci USA 107: 10943-10948. • PDF • Supp. Info •

Bedford T, Cobey S, Beerli P, Pascual M. 2010. Global migration dynamics underlie evolution and persistence of human influenza A (H3N2). PLoS Pathog 6: e1000918. • HTML • PDF • Supp. Info • Simulation • Analysis • Visualization • F1000 factor of 8.0 •

Bedford T, Hartl DL. 2009. Optimization of gene expression by natural selection. Proc Natl Acad Sci USA 106: 1133-1138. • PDF • Supp. Info • Supp. Appendix •

Rogers RL, Bedford T, Hartl DL. 2009. Formation and longevity of chimeric and duplicate genes in Drosophila melanogaster. Genetics 181: 313-322. • PDF •

Bedford T, Wapinski I, Hartl DL. 2008. Overdispersion of the molecular clock varies between yeast, Drosophila and mammals. Genetics 179: 977-984. • PDF •

Bedford T, Hartl DL. 2008. Overdispersion of the molecular clock: temporal variation of gene-specific substitution rates in Drosophila. Mol Biol Evol 25: 1631-1638. • PDF •

Volkman SK, Lozovsky E, Barry AE, Bedford T, Bethke L, Myrick A, Day KP, Hartl DL, Wirth DF, Sawyer SA. 2007. Genomic heterogeneity in the density of noncoding single-nucleotide and microsatellite polymorphisms in Plasmodium falciparum. Gene 387: 1-6. • PDF •

Castillo-Davis CI, Bedford T, Hartl DL. 2004. Accelerated rates of intron gain/loss and protein evolution in duplicate genes in human and mouse malaria parasites. Mol Biol Evol 21: 1422-1427. • PDF •

Nielsen KM, Kasper J, Choi M, Bedford T, Kristiansen K, Wirth DF, Volkman SK, Lozovsky ER, Hartl DL. 2003. Gene conversion as a source of nucleotide diversity in Plasmodium falciparum. Mol Biol Evol 20: 726-734. • PDF •

Feder ME, Bedford T, Albright DR, Michalak P. 2002. Evolvability of Hsp70 expression under artificial selection for inducible thermotolerance in independent populations of Drosophila melanogaster. Phys Biochem Zool 75: 325-334. • PDF •